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Arts & Sciences

Visit our home page at www.unomaha.edu/Uno/asweb/

A Star is Reborn: Mallory Kountze Planetarium

Writing at UNO is getting . . . easier?

Bioinformatics major a window to understand-ing life

IT pioneer Kerrigan still shaping the future

The 1970s saw the first microprocessor, the first floppy disk, the Apple II, the Tandy Radio Shack TSR-80, the evolution of the CP-M operating system and Ethernet networking, the birth of the first software worm and the first ATM.

 

Though many people remained merrily oblivious to this information technology locomotive then gaining steam, Patrick Kerrigan climbed aboard for the wild ride, then helped steer the course.

He began his journey in 1973, shortly after graduating from the College of Arts and Sciences with a double major in mathematics and physics. Initially, Kerrigan worked for First Data Resources as a COBOL programmer. Then it was on to Burroughs Corporation (now Unisys) as a technical representative. In 1977 he became the first employee and software developer for Information Technology Inc. of Lincoln, Neb.

 

"After I was in it [information technology] for three years, which would be a year into my third job, I began to appreciate the leveraging power of software and how much control it could be used to exert over an enterprise," Kerrigan recalls.

Today, more than one-third of U.S. banks depend on software systems developed by Information Technology. The company has grown to 700 employees in Lincoln, 200 in Sioux Falls, S.D., and 30 in Birmingham, Ala. Though Kerrigan ended his formal career with Information Technology in 1999 when he retired as chief operating officer, he stays involved with the company.

"For six years now I have done special projects at ITI on a 'less-official' basis," he says. "For about half of the time this summer I have been teaching my self-styled 'Management Best Practices' course to the company's top 70 managers."

 

Kerrigan continues to help shape the future, only now through his philanthropic ventures.

 

That includes furthering teaching and research missions through generous donations to the departments of mathematics and physics. Through the University of Nebraska Foundation Kerrigan recently established the Kerrigan Fund for Teaching Excellence in Mathematics to award exemplary teaching. The inaugural award was presented to Dr. Valentin Matache, who also coordinates Kerrigan's mini-grant research program that encourages (and pays) students to pursue mathematical research projects with faculty members of the mathematics department.

"I am honestly tickled by the projects taken on by the students," Kerrigan wrote. "I think good habits are contagious, but require exposure. And it is easier to enjoy learning when everybody around you is positive about it. The math faculty I have met seem very interactive with the students, which can only take the students to the next level.

"It makes me want to go to school again.

"When I went through UNO, I was on a bit of a mission to simply graduate. By the time I was graduating, I really felt maybe a little like I had shortchanged myself because there was not time for more of all the courses. It would not have taken too many more courses to minor in German, which Professors Thill and Jung made very understandable and enjoyable. I included physics as the second half of a double major quite simply because I came into contact with the enthusiasm of Dr. Jack Kasher teaching an introductory (and required for math) physics course. I think I can credit the required English courses (especially contemporary novel taught by Harvey Leavitt) with my lifelong enjoyment of reading. I was never able to squeeze in a history class (and had only one semester in high school), but I credit a survey course in the history of journalism and the desire to read that have made me so interested in biographies. I claim I have at least something comparable to a master's degree in history with my biographical reading. Thirty years ago, I got an excellent education at UNO. With the expanded and enhanced facilities now available and the excellent quality of the faculty that I have had the privilege to meet, I repeat that it would be great to go to school here again. Looking at what I have written here, it seems that because UNO has even its best faculty teaching some of the introductory courses, maybe that is the spirit of UNO. You didn't have to wait years to be exposed to the best. I had so many of my favorite instructors those first two years that I was apparently compelled to add majors and consider additional minors."

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A Star is Reborn: the Mallory Kountze Planetarium

The worn seats and tired carpet below testify to the hundreds of thousands of visitors who have gazed into the Mallory Kountze Planetarium heavens above. Eighteen years of dust dull its 33-foot dome, and what once was cutting-edge multimedia technology now is tired and cantankerous.

 

Still, there is magic in this place for the faculty and staff of UNO's physics department who have managed and promoted the planetarium since it opened in 1987. So, too, for the myriad elementary and secondary students who here have taken field trips through time and space.

 

Beginning this fall, though, this UNO star is being reborn.

 

The planetarium is undergoing an extensive overhaul thanks to funding from the Gilbert M. and Martha H. Hitchcock Foundation, Sarah and Sean Suiter, Frank and Shirley Hartranft and other friends of UNO. Assistance also is coming from the University of Nebraska Foundation.

 

Perhaps the most impressive improvement will be the addition of the Spitz ATM 4 system, which will bring the planetarium into the digital age both in terms of show production and equipment control. The previous control console (pictured) had its panels removed and sent for repair and upgrade. The new system and its software package will improve show quality while also reducing the labor required to produce the shows.

 

Previously, images often were produced by superimposing multiple images with multiple projectors. The new software automatically performs the superimposing and allows for a single projection. This reduces the need for many of the projectors formerly required (pictured).

 

Other significant changes include repairs and updates to the Spitz 512 starfield projector, the heart of the planetarium. The projector includes latitudinal, daily, annual and precessional motions for demonstration of various celestial phenomena. It also projects more than 2,000 stars and planets, and the entire instrument may be turned in azimuth rotation (360-degree). The 8-foot tall projector is lowered and raised via a special elevator to allow the planetarium to serve multiple purposes. New video materials will be purchased and supplementary LCD projectors will replace many of the dozens of slide and strip projectors.

 

Technology costs during the update are estimated at $85,000, with an annual maintenance cost of $5,000 to $10,000. Another $20,000 is estimated for cleaning of the dome and replacement of the carpet and seating.

 

The work is the first major update to the planetiarum since it opened. The planetarium originally was funded by The Hitchcock Foundation in memory of foundation president Mallory Kountze, who died in 1984. The tribute, designed to educate students about our "last frontier," befits this descendent of one of Omaha's pioneering families. For many years since, the planetarium's public shows have featured prominently in regional travel guides and on many lists of important things to see in Omaha.

 

The planetarium's new and improved look should debut starting with spring semester 2006, when it hosts about 500 students enrolled in UNO astronomy classes. It also will continue serving area elementary and secondary schools and the general public.

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Writing at UNO is getting . . . easier?

"Writing is easy," journalist Gene Fowler once said. "All you do is stare at a blank sheet of paper until drops of blood form on your forehead."

 

The anguish of the blank page, or, these days, the blank screen, is familiar to many at UNO, whether they be first-year college students or faculty with years of writing assignments behind them.

 

Help now is at hand. For the word-weary from all areas and stations of the UNO community the College of Arts & Sciences offers the new Writing Center.

There, explains Writing Center Director Connie Eberhart (pictured), "students and faculty alike have the opportunity to develop an ongoing, one-to-one relationship with a professional who can assist them through the term of a writing project, throughout a course, or throughout the college experience.

 

"Our mission is to help clients develop as writers, placing more focus on the writer than on any single piece of writing, helping the writer develop writing processes that lead to effective writing products."

 

The new facility is housed in the comfortably and brightly decorated Room 150 of Arts and Sciences Hall. It features wireless networking and comfortable spaces where consultants and clients can collaborate. A fresh pot of coffee and a network printer stand ready, side-by-side.

 

Graduate teaching assistants and instructors from the English Department make up the center's inaugural staff. Consultants from other disciplines could be added later.

 

For the formal or impromptu workshop, the room is equipped with a computer, DVD/VCR and Elmo presenter, all hooked to an LCD projector. All of the center's logistics are handled by an online service called Writing Center Online. For helpful links on writing or to sign up for a consultation, clients can visit the center's website at www.unomaha.edu/writingcenter.  

 

Writing Center services might be made available to alumni in the future.

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Bioinformatics major a window to understanding life

"The slippery gooiness of biology," says Dr. Geoffrey Dixon of Brandeis University, "is a consequence of its incredible complexity, consisting as it does of complex systems based upon chemistry.

 

"And chemistry obeys the rules of physics, which exists because of, and is consequently best described by, mathematics. Mathematics is the ur-fluid of reality (gad, how poetic), and our symbolic attempts to represent mathematics have given us windows through which our mushy grey-matter can peer, and with which this same mushy grey-matter becomes altered, and we call this alteration understanding (a frequently generous appellation)."

 

A critical tool for building these windows to understanding, scientists have discovered, is information technology.

 

Toward that end, the College of Arts and Sciences and the College of Information Science and Technology have teamed to create bioinformatics, a new major born from the synergism of biology, mathematics, chemistry and information technology. The program begins this fall with 30 students—a figure expected to grow quickly in the coming years. In addition to receiving a liberal arts foundation, students completing a bioinformatics degree will complete a minimum of 21 hours of information science and technology, 20 hours of mathematics, 16 hours of biology, 20 hours of chemistry and 13 hours of bioinformatics.

 

Improving Life

Biology Professor Bruce Chase, who helped develop the new major, explains how this exciting new area of study began to emerge:

 

"It grew initially from the needs of molecular biologists to be able to analyze large data sets that describe different types of biological molecules in distinct types of cells, in various disease states, or as organisms change during their growth and maturation," he says. "As molecular biologists became able to characterize an organism's tens of thousands of genes and their products, they faced the daunting challenge of being able to analyze enormous data sets.

 

"Bioinformatics was born as a synergistic effort as computer scientists, mathematicians and statisticians joined biologists to make sense of these data sets. It is now a field of its own, with many different facets."

Chase's own research illustrates just how bioinformatics may dramatically improve life.

 

"My work on biomarker development in Parkinson's disease uses tools developed by bioinformaticians," he says. "A biomarker for a disease is a measurement, based on some biological characteristic, that has utility in diagnosing or determining the stage of the disease. Parkinson's disease presents challenges for diagnosis and treatment because it results from the death of a particular subset of brain cells that cannot be directly assessed. As these cells die, individuals develop the movement abnormalities associated with Parkinson's disease. Accurate diagnosis of Parkinson's disease can be difficult, and a biomarker could aid in better diagnosis and, if so, in earlier, more effective treatment."

 

With clinical collaborators at the University of Thessaly in Greece, Chase et al can use gene chip technology to assay the levels of the products of about 40,000 human genes in the blood of Parkinsonian patients. He and others then can use bioinformatics methods to identify the constellation of genes whose products together serve as a biomarker for Parkinson's disease.

 

Classifying Life

Professor Quiong Lu, meanwhile, is employing bioinformatics to classify life.

Lu earned a doctorate in biology at University Laval (Canada) then a master's degree in bioinformatics at Concordia University in Montreal. He describes his particular interest as "exploring existing molecular databases to discover knowledge of species phylogeny and molecular evolution" and the "development and implementation of computer applications to facilitate that research." 

His favorite project to date is his role in developing Deep Fin, a web-based information center (www.deepfin.org/PIs.php) and international community of researchers interested in fish phylogeny (lines of descent or evolutionary development).

 

"We are becoming a national center for bioinformatics research," says Lu, who speaks enthusiastically about his work for the University of Nebraska-Lincoln, the University of Nebraska Medical Center and UNO.

 

He is particularly enthusiastic when discussing his role in recruiting students for the bioinformatics program.

 

"It is an exciting field to be in, and the students will be inspired whether they are coming from a biology background or an information technology background."

 

Defining Life

That certainly was the case with Tom Helikar (pictured, right; Jim Rogers left), an undergraduate in the bioinformatics program. Though he was hired for his programming skills to serve as a research assistant to Dr. Jim Rogers, Helikar since has developed a passion for biology and currently is planning to pursue a doctorate in that field at UNMC. Since Rogers, a mathematical biologist at UNO, also is a courtesy faculty at UNMC, Helikar can continue collaborating with Rogers while working on his Ph.D.

 

Helikar's inspiration to dramatically alter his life plan came through contact with Rogers' research hypothesis developed several years earlier. Having earned his doctorate in biology, Rogers had been working for several years in UNMC laboratories when he began to doubt that laboratory work on individual cells would ever unlock the mysteries of how cells—cancerous or healthy—processed signals.

 

He suspected there existed a much more complex system of information processing than anyone else had ever proposed and began to theorize that cells could not be understood when isolated from the whole. He knew he would not be able to investigate that theory in a traditional lab but would need to learn about mathematical modeling. He quit his job and went back to school to get a master's degree in math.

 

While working on his math degree, Rogers teamed with UNO Professor and Mathematics Chair Jack Hiedel to write a $450,000 National Institute of Health grant proposal to fund a three-year study in which they would use mathematical analysis to understand the structure and function of complex biochemical pathways.

 

The grant was approved, and Rogers was hired at UNO as an assistant professor of math this year (ending two years of unemployment). Math Professor John Konvalina since has joined the team of researchers, as has Helikar.

Rogers is quick to point out that although Helikar still is an undergraduate, the level of his work puts him on the same footing as other members of the team. "He is an equal," says Rogers.

 

The team soon may be closing in on a critical point in their research. Rogers' hopes are high not only for a clearer understanding of the complex intelligence of cells, but also for a clearer understanding of what life is.

In other words, he's hoping to open a window.

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